Yep if your dips are correct, but it's still misreading, it may be something with the tune - however you could try other dip settings to compensate? During my initial build/shakedown I was able to reflash multiple times myself until all issues got sorted. No sure if you're sending it out for updates or doing it yourself.
I'm not sure about the throttle site - I never paid attention to it. I just set the idle voltage to 4.62 per my setup instructions. Not sure with your different ECU.